The felony charges were dismissed Monday morning in Santa Clara County Superior Court.
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"Despite my best efforts to convince the victim to testify, she refused. That is her legal right. Regretfully, Ray McDonald will not face a jury for what he did that night. We are disappointed that he will not be held responsible," Deputy District Attorney Chris Lamiero said in a statement.
The indictment stems from a Dec. 15, 2014 incident at the 30-year-old former professional football player's home.
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The 49ers released Ray McDonald in December 2014, after San Jose police revealed the defensive lineman was under investigation for an alleged sexual assault.
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